Computational Analysis of Phenolic Compound Biodegradation in Polluted Water

Mohammed Abdulrazzaq Alsoufi

References:

1. B. Bakar, M. Akbulut, F. Ulusal, A. Ulu, N. Özdemir, and B. Ateş, “Horseradish peroxidase immobilized onto mesoporous magnetic hybrid nanoflowers for enzymatic decolorization of textile dyes: a highly robust bioreactor and boosted enzyme stability,” ACS Omega, vol. 9, no. 23, pp. 24558-24573, May 2024, [Online]. Available: https://doi.org/10.1021/acsomega.4c00703.
2. R. Al-Tohamy et al., “A critical review on the treatment of dye-containing wastewater: ecotoxicological and health concerns of textile dyes and possible remediation approaches for environmental safety,” Ecotoxicology and Environmental Safety, vol. 231, pp. 113160, January 2022, [Online]. Available: https://doi.org/10.1016/j.ecoenv.2021.113160.
3. C. Liu, L. Tan, K. Zhang, W. Wang, and L. Ma, “Immobilization of horseradish peroxidase for phenol degradation,” ACS Omega, vol. 8, no. 30, pp. 26906-26915, July 2023, [Online]. Available: https://doi.org/10.1021/acsomega.3c01570.
4. J. Zdarta et al., “Enhanced wastewater treatment by immobilized enzymes,” Current Pollution Reports, vol. 7, no. 2, pp. 167-179, April 2021, [Online]. Available: https://doi.org/10.1007/s40726-021-00183-7.
5. R. A. Aziz, “Characterization peroxidase from Prickly lettuce (Lactuca serriola L.) leaves,” Bioscience Research, vol. 18, no. 3, pp. 2342-2347, August 2021a, [Online]. Available: https://webofscience.com/wos/woscc/full-record/WOS:000718005900017.
6. R. Mall, G. Naik, U. Mina, and S. K. Mishra, “Purification and characterization of a thermostable soluble peroxidase from Citrus medica leaf,” Preparative Biochemistry & Biotechnology, vol. 43, no. 2, pp. 137-151, August 2012, [Online]. Available: https://doi.org/10.1080/10826068.2012.711793.
7. H. Ü. Erdem, R. Kalın, N. Özdemir, and H. Özdemir, “Purification and biochemical characterization of peroxidase isolated from white cabbage (Brassica oleracea var. capitata f. alba),” International Journal of Food Properties, vol. 18, no. 10, pp. 2099-2109, January 2015, [Online]. Available: https://doi.org/10.1080/10942912.2014.963868.
8. Z. Gong, D. Li, C. Liu, A. Cheng, and W. Wang, “Partial purification and characterization of polyphenol oxidase and peroxidase from chestnut kernel,” LWT, vol. 60, no. 2, pp. 1095-1099, October 2014, [Online]. Available: https://doi.org/10.1016/j.lwt.2014.10.012.
9. N. R. Ahirwar, N. J. G. Sharma, N. B. Singh, N. K. Kumar, N. P. Nahar, and N. S. Kumar, “A simple and efficient method for removal of phenolic contaminants in wastewater using covalent immobilized horseradish peroxidase,” Journal of Materials Science and Engineering B, vol. 7, no. 1, pp. 27-38, February 2017, [Online]. Available: http://www.davidpublisher.com/index.php/Home/Article/index?id=31164.html.
10. A. M. Jasim and G. M. Aziz, “Degradation efficiency of phenolic compounds using immobilized peroxidase purified from soybean,” Iraqi Journal of Agricultural Sciences, vol. 50, no. 3, pp. 928-935, June 2019, [Online]. Available: https://doi.org/10.36103/ijas.v50i3.709.
11. R. A. Aziz, “Purification of peroxidase from prickly lettuce (Lactuca serriola L.),” Journal of College of Basic Education, vol. 27, no. 111, pp. 16-27, January 2021b, [Online]. Available: https://iasj.rdd.edu.iq/journals/uploads/2025/01/18/2d350215b968592c5b638221cdad536a.pdf.
12. S. A. Mohamed et al., “Development of chia gum/alginate-polymer support for horseradish peroxidase immobilization and its application in phenolic removal,” Scientific Reports, vol. 14, no. 1, p. 1362, January 2024, [Online]. Available: https://doi.org/10.1038/s41598-024-51566-x.
13. M. E. El-Naggar, A. M. Abdel-Aty, A. R. Wassel, N. M. Elaraby, and S. A. Mohamed, “Immobilization of horseradish peroxidase on cationic microporous starch: Physico-bio-chemical characterization and removal of phenolic compounds,” International Journal of Biological Macromolecules, vol. 181, pp. 734-742, March 2021, [Online]. Available: https://doi.org/10.1016/j.ijbiomac.2021.03.171.
14. M. B. Vineh, A. A. Saboury, A. A. Poostchi, and A. Ghasemi, “Biodegradation of phenol and dyes with horseradish peroxidase covalently immobilized on functionalized RGO-SiO2 nanocomposite,” International Journal of Biological Macromolecules, vol. 164, pp. 4403-4414, September 2020, [Online]. Available: https://doi.org/10.1016/j.ijbiomac.2020.09.045.
15. F. Zhang, W. Zhang, L. Zhao, and H. Liu, “Degradation of phenol with horseradish peroxidase immobilized on ZnO nanocrystals under combined irradiation of microwaves and ultrasound,” Desalination and Water Treatment, vol. 57, no. 51, pp. 24406-24416, January 2016, [Online]. Available: https://doi.org/10.1080/19443994.2016.1138886.
16. S. Ariaeenejad, E. Motamedi, and G. H. Salekdeh, “Application of the immobilized enzyme on magnetic graphene oxide nano-carrier as a versatile bi-functional tool for efficient removal of dye from water,” Bioresource Technology, vol. 319, p. 124228, October 2020, [Online]. Available: https://doi.org/10.1016/j.biortech.2020.124228.
17. J. R. Whitaker and R. A. Bernhard, Experiments for an Introduction to Enzymology, The Whiber Press, Davis, CA, USA, 1972.
18. M. M. Bradford, “A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding,” Analytical Biochemistry, vol. 72, no. 1-2, pp. 248-254, May 1976, [Online]. Available: https://doi.org/10.1016/0003-2697(76)90527-3.
19. M. A. Alsoufi and R. A. Aziz, “Use of immobilized polyphenol oxidase in removal of phenol from some aqueous solutions,” Indian Journal of Ecology, vol. 47, no. 3, pp. 663-667, September 2020, [Online]. Available: https://agris.fao.org/search/en/providers/122535/records/65e0130f4c5aef494fe7ffec.
20. Y. R. Maghraby, R. M. El-Shabasy, A. H. Ibrahim, and H. M. E.-S. Azzazy, “Enzyme immobilization technologies and industrial applications,” ACS Omega, vol. 8, no. 6, pp. 5184-5196, January 2023, [Online]. Available: https://doi.org/10.1021/acsomega.2c07560.
21. K. Sellami et al., “Bio-based and cost effective method for phenolic compounds removal using cross-linked enzyme aggregates,” Journal of Hazardous Materials, vol. 403, p. 124021, September 2020, [Online]. Available: https://doi.org/10.1016/j.jhazmat.2020.124021.
22. N. Pantić, R. Prodanović, K. I. Đurđić, N. Polović, M. Spasojević, and O. Prodanović, “Optimization of phenol removal with horseradish peroxidase encapsulated within tyramine-alginate micro-beads,” Environmental Technology & Innovation, vol. 21, p. 101211, October 2020, [Online]. Available: https://doi.org/10.1016/j.eti.2020.101211.
23. M. B. Vineh, A. A. Saboury, A. A. Poostchi, A. M. Rashidi, and K. Parivar, “Stability and activity improvement of horseradish peroxidase by covalent immobilization on functionalized reduced graphene oxide and biodegradation of high phenol concentration,” International Journal of Biological Macromolecules, vol. 106, pp. 1314-1322, August 2017, [Online]. Available: https://doi.org/10.1016/j.ijbiomac.2017.08.133.
24. T. M. E. Silva, A. R. D. Santos, and S. S. Caramori, “Peroxidase from green zucchini (Cucurbita pepo L.) immobilized on natural polymers removes phenolic compounds from water samples,” Revista Ambiente & Água, vol. 13, no. 6, p. e2226, November 2018, [Online]. Available: https://doi.org/10.4136/ambi-agua.2226.